Unité de Recherche Génomique-Info (URGI)

Présentation du laboratoire

Le laboratoire URGI est une unité de recherche en génomique et bio-informatique de l'Institut National de la Recherche Agronomique (INRA), dédiée aux plantes et leurs pathogènes. Ses recherches portent sur l'intégration des données et la structure et la dynamique des génomes. Le laboratoire concoit un système d'information, et développe des outils d'analyses. Ses travaux sont mis à disposition à travers la plateforme URGI du réseau des plateformes de l'Institut Français de Bioinformatique. Certains sont entrepris avec des partenaires industriels importants comme Biogemma ou Florimond-Desprez.

Les 20 dernières publications

Titre Auteurs Date de publication Source
Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila Véronique Jamilloux, Hadi Quesneville 01/12/2022 Nature Communications
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes Sana Haddad 01/12/2022 Mobile DNA
Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative Michael Alaux, Hadi Quesneville 01/11/2022 Agronomy
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci Florian Maumus 01/10/2022 Genome Biology and Evolution
Capturing Wheat Phenotypes at the Genome Level Michael Alaux 04/07/2022 Frontiers in Plant Science
Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements Florian Maumus 04/07/2022 Frontiers in Plant Science
ELIXIR biovalidator for semantic validation of life science metadata Philippe Rocca-Serra 01/06/2022 Bioinformatics
Genome-Wide Screening of Transposable Elements in the Whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae), Revealed Insertions with Potential Insecticide Resistance Implications Johann Confais 01/05/2022 Insects
The era of reference genomes in conservation genomics Florian Maumus 01/03/2022 Trends in Ecology and Ecolution
Survival and growth of 711 forest tree taxa in eight French arboretums from three different climate regions Célia Michotey 01/01/2022 Annals of Silvicultural Research
Transposable elements in the genome of the Lichen-forming fungus Umbilicaria pustulata and their distribution in different climate zones along elevation Véronique Jamilloux, Nathalie Choisne 01/01/2022 Biology
Breeding for Economically and Environmentally Sustainable Wheat Varieties: An Integrated Approach from Genomics to Selection Michael Alaux 01/01/2022 Biology
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp Florian Maumus 01/12/2021 BMC Biology
Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp (BMC Biology, (2021), 19, 1, (1), 10.1186/s12915-020-00927-9) Florian Maumus 01/12/2021 BMC Biology
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation Hadi Quesneville 01/12/2021 Mobile DNA
Grapevine and wine metabolomics-based guidelines for fair data and metadata management Anne Francëoise Adam-Blondon 01/11/2021 Metabolites
A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges Hadi Quesneville 01/10/2021 PLoS ONE
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena) Vikas Sharma, Florian Maumus 23/07/2021 Frontiers in Plant Science
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development Florian Maumus 01/06/2021 Science advances
Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research Florian Maumus 01/04/2021 Plant Journal

Nombre de publications du laboratoire par domaine scientifique (2016-2021)

Chaque publication du laboratoire peut être rangée dans une ou plusieurs disciplines scientifiques : la figure ci-dessus présente le nombre de publications du laboratoire pour chaque discipline de la classification ASJC (Elsevier)