Mathématiques et Informatique Appliquées du Génome à l'Environnement (MaIAGE)

Laboratory presentation

MaIAGE is made up of mathematicians, computer scientists, biocomputational scientists and biologists working together in the fields from biology and agro-environment friendly solutions, from the molecular scale to the study of individual beings, populations of ecosystems. MaIAGE develops mathematical and computational methods in order to overcome specific biological issues. It also has a hand in creating databases and software allowing biologists to use tools in the right conditions, or even exploit scientific litterature automatically.

Statistical inference and dynamic modelling are some of the unit's highest expertises, to which biocomputation, automation and algorythmics can be added. The research and engineering activities are also highly intertwined with the avenues they are aimed at, such as sustainable development, molecular biology and the biology of systems.

The 20 latest publications

Title Authors Publication date Source
Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii Pierre Nicolas 04/26/23 Applied and Environmental Microbiology
Greedy reduction of Bacillus subtilis genome yields emergent phenotypes of high resistance to a DNA damaging agent and low evolvability Etienne Dervyn, Anne Gaëlle Planson, Kosei Tanaka, François Lecointe, Philippe Noirot, Matthieu Jules 04/11/23 Nucleic Acids Research
A HDG Method for Elliptic Problems with Integral Boundary Condition: Theory and Applications Lorenzo Sala 04/01/23 Journal of Scientific Computing
Comparative analysis of bacterial diversity in clouds and aerosols Olivier Rué 04/01/23 Atmospheric Environment
Inferring ASF transmission in domestic pigs and wild boars using a paired model iterative approach François Deslandes, Elisabeta Vergu 03/01/23 Epidemics
RNA-seq analysis of the active chick embryo chorioallantoic membrane reveals genes that encode proteins assigned to ion transport and innate immunity Christelle Hennequet-Antier 03/01/23 Genomics
Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback∗ Claudia Lopez-Zazueta, Vincent Fromion 03/01/23 SIAM Journal on Applied Dynamical Systems
A New Integrative and Mobilizable Element Is a Major Contributor to Tetracycline Resistance in Streptococcus dysgalactiae subsp. equisimilis Julie Lao, Hélène Chiapello, Thomas Lacroix 03/01/23 Antibiotics
Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase Pierre Nicolas, Cyprien Guérin, Sandra Derozier 02/03/23 PLoS Genetics
Phage production is blocked in the adherent-invasive Escherichia coli LF82 upon macrophage infection Pierre Nicolas 02/01/23 PLoS Pathogens
Tumorigenesis and axons regulation for the pancreatic cancer: A mathematical approach Mathieu Mezache 01/07/23 Journal of Theoretical Biology
Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach Sandra Derozier, Robert Bossy, Louise Deléger, Mouhamadou Ba, Estelle Chaix, Valentin Loux, Claire Nédellec 01/01/23 PLoS ONE
Tell me if you prefer bovine or poultry sectors and I’ll tell you who you are: Characterization of Salmonella enterica subsp. enterica serovar Mbandaka in France Madeleine De Sousa Violante, M. Y. Mistou 01/01/23 Frontiers in Microbiology
Learning and strategic imitation in modelling farmers' dynamic decisions on bovine viral diarrhoea vaccination Lina Cristancho-Fajardo, Elisabeta Vergu 12/02/22 Veterinary Research
Predicting veal-calf trading events in France Elisabeta Vergu 12/01/22 Preventive Veterinary Medicine
Adaptation of the gut pathobiont Enterococcus faecalis to deoxycholate and taurocholate bile acids Benoit Quinquis 12/01/22 Scientific Reports
Single Seed Microbiota: Assembly and Transmission from Parent Plant to Seedling Beatrice Laroche 12/01/22 mBio
Retrospective analysis of SARS-CoV-2 omicron invasion over delta in French regions in 2021–22: a status-based multi-variant model Elisabeta Vergu 12/01/22 BMC Infectious Diseases
A unique, newly discovered four-member protein family involved in extracellular fatty acid binding in Yarrowia lipolytica Véronique Martin, Gwenaëlle André 12/01/22 Microbial Cell Factories
FirmiData: a set of 40 genomes of Firmicutes with a curated annotation of ICEs and IMEs Julie Lao, Thomas Lacroix, Hélène Chiapello 12/01/22 BMC Research Notes

Number of publications of the laboratory by scientific field (2016-2021)

Every paper can be classified in one or more scientific fields. The figure below shows the lab's number of publications in each scientific field, according to the ASJC classification (Elsevier)