[{"command":"insert","method":null,"selector":".course-modal-ajax-placeholder-954934","data":"\u003Cdiv class=\u0022container content-rte\u0022\u003E\n  \u003Cdiv class=\u0022row\u0022\u003E\n    \u003Cdiv class=\u0022box col-md-6 bg-primary text-white\u0022\u003E\n      \u003Ch2 class=\u0022h1 text-left\u0022\u003E  Introduction \u00e0 la m\u00e9tag\u00e9nomique\n\u003C\/h2\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EECTS :\n          3\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ESemestre calendaire :\n          Semestre 1\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n            \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ED\u00e9tail du volume horaire\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ECours magistraux :\u003C\/span\u003E\n                                      \u003Cspan\u003E10\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                              \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ETravaux dirig\u00e9s :\u003C\/span\u003E\n                                      \u003Cspan\u003E15\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                                            \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ELangue d\u0026#039;enseignement\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EAnglais\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EEnseignement \u00e0 distance\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003Enon\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n    \u003Cdiv class=\u0022box col-md-6\u0022\u003E\n            \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EPr\u00e9requis\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EBasic knowledge in microbiology and high interest in the biology of bacteria, phages, and plasmids interacting in communities and in interactions with pluricellular hosts. Strong interest in genomics, big data analysis, and bioinformatics. A mobile, personal computer is required for this course (as it cannot be provided).\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EProgramme \/ plan \/ contenus\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThis course provides a basic and comprehensive introduction to the dynamic field of metagenomics, which is essential for understanding microbiome-host interactions. Participants will receive introductory classes of diverse topics such as the human gut microbiome, plant-microbe interactions, and the roles of viruses (virome) within microbiomes. Metagenomics is key in advancing our understanding of microbial diversity, ecosystem dynamics, and their implications for health, agriculture, and the environment.\u003C\/p\u003E\n\u003Cp\u003ELectures will be given by experts in the field, and participants will analyze real-world datasets by gaining hands-on experience with R (RStudio), computing clusters, and command-line tools. The approaches will include data pre-processing, community analysis, taxonomic profiling, functional annotation, and data visualization.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EObjectifs d\u0026#039;apprentissage\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EBy the end of the course, participants will have the confidence to approach metagenomic datasets and understand their relevance to scientific challenges in microbiology, ecology, and beyond. Participants will acquire following skills:\u003C\/p\u003E\n\u003Cp\u003E\u2022 Comprehensive knowledge and hands-on experience using high computing clusters (job submission, resource allocation, big data management)\u003C\/p\u003E\n\u003Cp\u003E\u2022 Familiarity with metagenomic sequencing data and analysis tools\u003C\/p\u003E\n\u003Cp\u003E\u2022 Format sequencing data for statistical analysis\u003C\/p\u003E\n\u003Cp\u003E\u2022 Interpret graphical representations of microbial diversity and its analysis\u003C\/p\u003E\n\u003Cp\u003E\u2022 Differentiate between the specific characteristics of animal and plant microbiota\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EOrganisation g\u00e9n\u00e9rale et modalit\u00e9s p\u00e9dagogiques\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThe course will take place over a period of 5 days. Lectures will be given in the morning, including tutorials and introduction to exercises. In these tasks (done in afternoon), students will learn how to work with computing clusters, and analyze metagenomic datasets. Assistance and support will be given by lectures, and experienced researchers.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EModalit\u00e9s p\u00e9dagogiques particuli\u00e8res\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EProject based and bioinformatics.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EComp\u00e9tences\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003E\u2022 Ability to define metagenomics, explain its necessity for understanding microbiome-host (holobiont) interactions, and articulate its relevance across diverse fields (e.g., human health, plant-microbe interactions, and the environment, role of viruses). Explaining how metagenomics advances our knowledge of microbial diversity and ecosystem dynamics.\u003C\/p\u003E\n\u003Cp\u003E\u2022 Understanding and clearly articulating the complete metagenomic workflow - from sample collection and sequencing strategy (e.g., short-read vs. long-read) to final computational analysis, including the distinction between data types (e.g., 16S amplicon vs. shotgun metagenomics).\u003C\/p\u003E\n\u003Cp\u003E\u2022 Competence in applying methods for functional annotation and gene prediction, demonstrating how to use bioinformatics to link gene data to functional potential.\u003C\/p\u003E\n\u003Cp\u003E\u2022 Ease\u0026nbsp;in using R (or RStudio) for data visualization (e.g., bar\/box plots, heatmaps) with the goal of clearly communicating complex findings\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n                \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ENature de l\u0026#039;\u00e9valuation\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EEvaluation Continue non Int\u00e9grale\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n  \u003C\/div\u003E\n\u003C\/div\u003E\n","settings":null}]