[{"command":"insert","method":null,"selector":".course-modal-ajax-placeholder-953923","data":"\u003Cdiv class=\u0022container content-rte\u0022\u003E\n  \u003Cdiv class=\u0022row\u0022\u003E\n    \u003Cdiv class=\u0022box col-md-6 bg-primary text-white\u0022\u003E\n      \u003Ch2 class=\u0022h1 text-left\u0022\u003E  Plant genomics and bioinformatics (Elective courses B - option 1)\n\u003C\/h2\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EECTS :\n          4\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ESemestre calendaire :\n          Semestre 1\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n            \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ED\u00e9tail du volume horaire\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ECours magistraux :\u003C\/span\u003E\n                                      \u003Cspan\u003E17\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ETravaux pratiques :\u003C\/span\u003E\n                                      \u003Cspan\u003E12.5\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ETravaux dirig\u00e9s :\u003C\/span\u003E\n                                      \u003Cspan\u003E2\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003EProjet tutor\u00e9\u003C\/span\u003E\n                                      \u003Cspan\u003E4\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                              \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ELangue d\u0026#039;enseignement\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EAnglais\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EEnseignement \u00e0 distance\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003Enon\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n    \u003Cdiv class=\u0022box col-md-6\u0022\u003E\n                    \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EProgramme \/ plan \/ contenus\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThe application of genomics and bioinformatics tools to the study of the genome of cultivated plants will be presented. The specific features of genome structure, such as duplications, transposable elements and multi-genomes, as well as the genome diversity of cultivated plants, including heterozygosity, will be discussed in relation to the evolution of crops and specific agronomic traits. The specificities of organelle genomes will also be presented and discussed. The available genetic and genomic resources will be presented in light of their potential applications. The section on teaching bioinformatics through practical exercises will expand on the concepts of comparative genomics, protein motif research, and structure-function relationships. It will also introduce gene regulatory networks and protein-protein interaction networks, demonstrating how to construct and analyse them for functional annotation.\u003Cbr\u003E\nThis course provides an overview of the principles of long-read sequencing and its advantages for generating high-quality de novo assemblies, including those of entire genomes from telomere to telomere (T2T). Students will explore methods for evaluating the quality of genome assemblies and discuss their key applications in genomics research. The course will introduce pangenomes and pangenomics, emphasising their role in representing genetic diversity beyond single reference genomes.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EObjectifs d\u0026#039;apprentissage\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EUnderstand the basic elements and specificities of genomics as applied to cultivated plants. Use the different bioinformatics databases and their characteristics to perform an appropriate search by selecting specific parameters. Understand the specificities of genome evolution in cultivated plants, as well as the natural and artificial processes involved in creating genetic diversity.\u0026nbsp;\u003Cbr\u003E\nExplain the principles of long-read sequencing and evaluate its advantages for de novo assembly up to T2T genomes. Describe the concepts of pangenomes and pangenomics.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EOrganisation g\u00e9n\u00e9rale et modalit\u00e9s p\u00e9dagogiques\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003E- Lectures to introduce and define new concepts.\u0026nbsp;\u003Cbr\u003E\n- The course involves mainly practical work using bioanalysis tools to introduce bioinformatics, as well as supervised work for the assessed bioinformatics project.\u003Cbr\u003E\n- Supervised bibliographic work to analyse articles for an assessed oral presentation.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n                \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EComp\u00e9tences\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003E- Explain the importance of high-throughput sequencing and bioinformatics in plant genome analysis, outlining the advantages and limitations of next-generation sequencing techniques.\u003Cbr\u003E\n- Describe the main mechanisms of plant genome evolution, such as polyploidy, interspecific hybridization, transposition and structural rearrangements.\u003Cbr\u003E\n- Explain the molecular mechanisms involved in creating useful diversity for improving crops.\u003Cbr\u003E\n- Know how to use public databases and bioinformatics tool platforms.\u003Cbr\u003E\n- Present a scientific study and summarise the main results and conclusions; know how to communicate a scientific message.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n                \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ENature de l\u0026#039;\u00e9valuation\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EEvaluation Continue non Int\u00e9grale\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n  \u003C\/div\u003E\n\u003C\/div\u003E\n","settings":null}]