[{"command":"insert","method":null,"selector":".course-modal-ajax-placeholder-958543","data":"\u003Cdiv class=\u0022container content-rte\u0022\u003E\n  \u003Cdiv class=\u0022row\u0022\u003E\n    \u003Cdiv class=\u0022box col-md-6 bg-primary text-white\u0022\u003E\n      \u003Ch2 class=\u0022h1 text-left\u0022\u003E  Bioinformatic tools\n\u003C\/h2\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EECTS :\n          3\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n                  \u003Cdiv class=\u0022field-spacing\u0022\u003E\n        \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ESemester:\n          Semestre 1\n        \u003C\/div\u003E\n      \u003C\/div\u003E\n            \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ED\u00e9tail du volume horaire\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003ELecture:\u003C\/span\u003E\n                                      \u003Cspan\u003E9\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                              \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                          \u003Cspan class=\u0022field__label h4 mt-5 \u0022\u003EDirected study:\u003C\/span\u003E\n                                      \u003Cspan\u003E13.5\u003C\/span\u003E\n                      \u003C\/div\u003E\n                                                            \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ELangue d\u0026#039;enseignement\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EAnglais\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EEnseignement \u00e0 distance\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003Enon\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n    \u003Cdiv class=\u0022box col-md-6\u0022\u003E\n            \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EPr\u00e9requis\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003ETheory and practice concerning sequence data, databases and sequence formats, alignments with exact algorithms (dynamic programming) and practice of BLAST on standard databases online.\u003Cbr\u003E\nBasical knowledge on evolution principles and population genetics.\u003Cbr\u003E\nUnix\/Linux concepts and utility filters.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EProgramme \/ plan \/ contenus\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThe course outline:\u003C\/p\u003E\n\u003Cp\u003E- Main courses:\u003C\/p\u003E\n\u003Cul\u003E\n\u003Cli\u003Ereminder about exact alignment algorithms and alignment scores,\u003C\/li\u003E\n\u003Cli\u003Ereminders of basic evolutionary principles,\u003C\/li\u003E\n\u003Cli\u003Econstruction of scoring matrices (substitution matrices),\u003C\/li\u003E\n\u003Cli\u003EBLAST algorithm, modification of parameters, statistical principles and local usage\u003C\/li\u003E\n\u003Cli\u003Eprotocols to determine homologies\u003C\/li\u003E\n\u003C\/ul\u003E\n\u003Cp\u003E- Directed work:\u003C\/p\u003E\n\u003Cul\u003E\n\u003Cli\u003Ecalculation of alignment scores and comparisons, alignment calculations using dynamic programming,\u003C\/li\u003E\n\u003Cli\u003Einterpretation of blast results (local and online)\u003C\/li\u003E\n\u003Cli\u003Eestablishment of a bioinformatics protocol for the determination of protein families and subfamilies\u003C\/li\u003E\n\u003C\/ul\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EObjectifs d\u0026#039;apprentissage\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThe objectives of this course are:\u003Cbr\u003E\n-\u0026nbsp;\u0026nbsp;\u0026nbsp;\u0026nbsp;to understand deeply the advantages and limits of sequence comparison through standard bio-informatic tools,\u0026nbsp;\u003Cbr\u003E\n-\u0026nbsp;\u0026nbsp;\u0026nbsp;\u0026nbsp;to be able to set up bioinformatics protocols and to be critical of the established protocols,\u003Cbr\u003E\n-\u0026nbsp;\u0026nbsp;\u0026nbsp;\u0026nbsp;to be able to correctly interpret results from sequence comparison tools, taking into account the evolutionary mechanisms at work.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n        \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EOrganisation g\u00e9n\u00e9rale et modalit\u00e9s p\u00e9dagogiques\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EThis teaching unit is organized in the form of main courses (9h) and practical work (13,5h) in the computer room. Students will be evaluated through several small exams in class and a final exam.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n                \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003EComp\u00e9tences\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003E\u003Cp\u003EC1.1. Formuler des probl\u00e9matiques et des hypoth\u00e8ses de travail permettant la conception et la r\u00e9alisation d\u2019un projet dans son domaine d\u2019expertise et \/ou \u00e0 l\u2019interface de plusieurs domaines en biologie.\u003C\/p\u003E\n\u003Cp\u003EC1.2. Concevoir une d\u00e9marche exp\u00e9rimentale.\u003C\/p\u003E\n\u003Cp\u003EC1.3. \u00c9tablir, r\u00e9aliser et optimiser des protocoles exp\u00e9rimentaux.\u003C\/p\u003E\n\u003Cp\u003EC1.4. Produire et valider des donn\u00e9es scientifiques.\u003C\/p\u003E\n\u003Cp\u003EC3.2. Argumenter les choix m\u00e9thodologiques et les interpr\u00e9tations d\u2019une \u00e9tude.\u003C\/p\u003E\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n                \u003Cdiv class=\u0022field-spacing\u0022\u003E\n      \u003Cdiv class=\u0022field__label h3 dash\u0022\u003ENature de l\u0026#039;\u00e9valuation\u003C\/div\u003E\n                        \u003Cdiv class=\u0022mt-5 text-justify\u0022\u003E\n                                      \u003Cspan\u003EEvaluation Continue non Int\u00e9grale\u003C\/span\u003E\n                      \u003C\/div\u003E\n                  \u003C\/div\u003E\n      \u003C\/div\u003E\n  \u003C\/div\u003E\n\u003C\/div\u003E\n","settings":null}]